Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015845192.1_cds_XP_016509268.1_22212
CDS Infomation

[gene=LOC107826752] [db_xref=GeneID:107826752] [protein=vacuolar-sorting receptor 6-like] [protein_id=XP_016509268.1] [location=complement(join(72461..72580,72686..72789,72946..73074,73187..73250,73338..73420,74029..74110,74234..74310,74410..74493,74645..74714,74832..74920,75015..75707,76711..77011))] [gbkey=CDS]
Sequence

ATGGCTGCTCTCTTTTTCCTAGTAGTTGTTTTACCTTTTTTCTTGATAGTATCGAATGTT
GTTGTAATTGAGGCAACATTTATAGTAGAAAAAAACAGTATAAGTGTTCTATCACCTTAT
TCAATGCACTCAAAGCATGATGCTTCTATTGGTAATTTTGGTGTACCTGATTATGGAGGT
TCTTTGGTTGGAACTGTTGTTTATCCTAAGAAAGATTCCAATGGTTGCTCTTCCTTTGAT
GGTGATAAGCCCTTCAAATCCCAGGCTCATCGTCCTAATTTTCTTCTTCTTGATCGCGGA
GACTGCTATTTTGCTTTGAAGGTTTGGAATGGGCAACAAGCTGGAGCTGCTGCAGTTCTA
GTGGCTGATAGCATAGATGAGCCTCTTATAACTATGGATTCTCCTGAAGAAAGCACGGAC
GCTGATGGATACATTGACAAGATTGGAATCCCCTCAGCTTTAATTGGAAAATCCTTTGGC
GACACATTAAAAGAAGCTCTGAAGAAGGGAGAGAAAGTTGTGATCAAAATGGATTGGACA
GAGTCCATGCCGCACCCTGATCAGCGTGTCGAGTACGAGCTGTGGACTAATAGCAACGAT
GAGTGTGGGGTTCGCTGTGACGAGCAAATGAATTTCATTAAGAGCTTCAAGGGACATGCG
CAGATACTTGAAAAGGGCGGTTACACTATGTTCACGCCTCACTATATTACTTGGTACTGT
CCTGAAGCATTCATTCTTAGTAGTCAGTGCAAATCTCAGTGCATAAATCACGGGAGATAT
TGCGCTCCTGATCCTGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGACATTGTCTTT
GAGAACTTAAGGCAGCTCTGTGTGCATAGAGTTGCAAATGAGAGTAACCGTTCTTGGGTT
TGGTGGGATTATGTGACGGATTTCCATATCAGATGTTCAATGAAGCAAAAGAGATACAGC
AAAGAATGTGCTGAGGAGGTCATGAAATCACTCGATTTACCTGTTGAGAAGATAAAGAAA
TGCATGGGTGATCCAGAGGCTAATGTAGAAAATACAGTGCTAAAGACTGAGCAAGATCTC
CAGGTCGGCCGAGGACCTCGTGGTGATGTGACAATCTTACCAACAATGGTCGTCAATGAT
GTTCAATATCGAGGAAAATTGGAGAGGGCTGCTGTTTTGAAGGCCATATGTGCTGGATTT
AAGGAAACAACTGAACCTTCGATATGTTTAAGCGGAGATCTTGAAACAAATGAGTGCCTT
GAAAGGAATGGTGGCTGTTGGCGGGATCCAAAATCTAACGTAACTGCCTGCAAGGACACT
TTTAGAGGAAGAGTTTGTGAGTGCCCTTCGGTGAACGGCGTTCAGTATAAAGGAGATGGA
TACACATCTTGTGAAGCCGTTGGACCTGGAAGGTGTACGGTAAACAATGGAGGATGCTGG
TCAGAAACCAGAAATGGGGAAACATTCTCAGCATGCTCAGAGGCAGATCCATCAGGCTGT
AAGTGTCCATTTGGTTTTCAAGGGGATGGCCATAAATGTGAAGACATAGATGAATGCAAA
GCAGGATTTGCTTGTCAGTGTGATGGCTGTAGCTGTAAGAACACATGGGGCGGATACGAT
TGCAAGTGTAAAGGAAATCAACTGTACATAATGGAGCATGATACTTGTATAGAAAGGCAC
TCATCAAAGGTTGGACGGGTCCTTATATTCTCTATCCTAGCCATTGCAGTGGGTGCTGGA
GTAGCTTGTTACATTTTTTACAAATATAGACTTCGGTCATACATGGACTCGGAGATTATG
GCTATTATGTCACAGTACATGCCTCTTGATAACAACCATCAGAATCAGGTTGTTGTCCAT
CACGAAACTGAACCTCTGCGACAGAGCTCAGTATGA

Peptide Sequence

PEP ID

XP_016509268.1
PEP Infomation

PREDICTED: vacuolar-sorting receptor 6-like [Nicotiana tabacum]
Sequence

MAALFFLVVVLPFFLIVSNVVVIEATFIVEKNSISVLSPYSMHSKHDASIGNFGVPDYGG
SLVGTVVYPKKDSNGCSSFDGDKPFKSQAHRPNFLLLDRGDCYFALKVWNGQQAGAAAVL
VADSIDEPLITMDSPEESTDADGYIDKIGIPSALIGKSFGDTLKEALKKGEKVVIKMDWT
ESMPHPDQRVEYELWTNSNDECGVRCDEQMNFIKSFKGHAQILEKGGYTMFTPHYITWYC
PEAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDIVFENLRQLCVHRVANESNRSWV
WWDYVTDFHIRCSMKQKRYSKECAEEVMKSLDLPVEKIKKCMGDPEANVENTVLKTEQDL
QVGRGPRGDVTILPTMVVNDVQYRGKLERAAVLKAICAGFKETTEPSICLSGDLETNECL
ERNGGCWRDPKSNVTACKDTFRGRVCECPSVNGVQYKGDGYTSCEAVGPGRCTVNNGGCW
SETRNGETFSACSEADPSGCKCPFGFQGDGHKCEDIDECKAGFACQCDGCSCKNTWGGYD
CKCKGNQLYIMEHDTCIERHSSKVGRVLIFSILAIAVGAGVACYIFYKYRLRSYMDSEIM
AIMSQYMPLDNNHQNQVVVHHETEPLRQSSV

Transcript Sequence

Gene sequence data has not been registered.